Influenza H1N1 Outbreak in Humans California, Texas and Mexico Fact Sheet
April 27, 2009

This fact sheet is a summary of the background information and on the influenza virus that has been found in Texas, California and Mexico in March and April of 2009. The information contained is this document is believed to be correct based on the best currently available information but information can and does change daily that may warrant previous information incorrect.

Human Cases of Novel North American Influenza A(H1N1) 2009

The current Influenza H1N1 outbreak is a significant human health concern and has not been detected in livestock including swine. It is important to remember that influenza in humans is a constantly evolving disease which is estimated to kill 250,000 to 500,000 people worldwide every year. Department of Homeland Security Secretary Janet Napolitano declared a public health emergency in the United States. This declaration allows funds to be released to support the public health response both in the United States and other affected countries. Secretary Napolitano stated the following during her declaration – “Preliminary investigations have determined that none of the people infected with the hybrid flu had contact with hogs. This virus is different, very different from that found in pigs.”

The number of confirmed cases is changing rapidly and will certainly increase daily for some time. There are at least five states with reported outbreaks and four countries reporting laboratory confirmed human cases include Canada and Spain. Of the cases in the United States only one has required hospitalization and most have been very mild. In the case of more severe signs, the virus is sensitive to the antiviral drugs oseltamivir (“Tamiflu”, Roche) which the US has very large stockpiles available for use and zanamivir. The strains currently included in the human flu vaccine do not provide cross-protection to the currently circulating virus.

The virus currently infecting humans has never been found in pigs or any other species prior to this outbreak. At this point the virus is currently only known to be human-adapted and has only caused clinical disease in humans. Because of the lack of evidence of animal involvement the World Organization for Animal Health (OIE) is recommending that a more appropriate name for the virus would be “North-American influenza”. Despite the fact that the World Health Organization (WHO) continues to confirm that pork is safe to eat 5 countries (Russia, China, Philippines, Serbia, and Kazakhstan) have announced bans on some pork imports from the United States and Mexico.

Signs of Influenza H1N1 in people are very similar to the signs of regular seasonal human flu and include fever, cough, sore throat, body aches, headaches, and lethargy. Much like the seasonal flu, Influenza H1N1 in people is capable of causing disease ranging in severity from mild to severe. The virus typically spreads mainly from person to person through coughing or sneezing. Infected people generally shed the virus from 1 day prior to the development of clinical signs up to 7 days following recovery.

The National Pork Producers Council (www.pork.org) and the American Association of Swine Veterinarians (www.aasv.org) have provided a specific list of actions producers can take to respond to the current influenza outbreak. These recommendations can be found on the AASV Homepage. Click here to find these helpful facts.

Reliable information sources
  1. There is a daily update posted at http://www.cdc.gov/flu/swine/investigation.htm that presents the official update of the number of cases that have been confirmed. 
  2. The international disease outbreak monitoring service ProMed is also a reliable source of information on the current state of the outbreak.
  3. Background information on Influenza H1N1 can be found at http://www.cdc.gov/swineflu/
Influenza background
  • There are two main types of influenza viruses – Type A and Type B.  Only Type A viruses commonly infect swine. 
  • The influenza virus has 8 separate gene segments that can recombine in any manner.  
  • These gene segments can “trade around” so you can get about any combination if a person or pig is infected with multiple viruses at the same time.  
  • Two of these gene segments are important for the immune system to “see “ the virus: the HA gene and the NA gene.  
  • We name influenza isolates based on which HA and NA gene segments they have– ie H1N1, or H3N2.  
  • There are many types of both the HA and NA genes but only H1 and H3 and N1 and N2 commonly infect pigs.  
  • We call isolates “Swine” or “Bird” or “Human” flu based on where the HA gene in the virus is normally seen.  
  • Birds are the “normal host” for flu so the genetic origin for all flu can be traced back to “bird flu”.  The common “swine flu” H1 started as the human H1 in the 1918 pandemic virus.  The “swine flu” H3 we believe originated in humans in the 1970’s and then was passed to pigs.  
  • We name “strains” of flu not only by their HA and NA type but by the other 6 genes as well.  We keep them straight with the following naming convention.
    • Subtype/Species they were found in/Location they were isolated from/Year/HA type NA type
    • A/Swine/Illinois/2009/H1N1 - would be an example from an isolate that we had last week.  
Monitoring for Influenza in the North American Swine Herd

In spite of media reports that there is no Influenza surveillance in US swine we have a VERY large network that has done a very good job of tracking trends in Influenza “strains” present in the NA swineherd.  It is true that the USDA has not funded a surveillance project for pigs like CDC does for people but there is a large group of concerned veterinarians that have worked with the support of our clients to build a broad and deep database over the last 5 years.  We have built this database not only to help make vaccine decisions for each individual company but to build a database so that we can respond with a high degree of confidence about what we know and what we don’t know to other scientists, health care providers and the media.  Drs. Marie Gramer (U of Minnesota, VDL) and Amy Vincent (NVSL, Ames) have worked tirelessly to assist us in building this base of information and understand the Influenza viruses that are present in the NA swineherd.

Characteristics of Influenza H1N1 virus found in people in TX, CA and Mexico

We know the origin of each of the 8 gene segments and this is clearly a new re-assortment virus.
  • The HA gene (H1) is like a virus we have seen in the US for several years.  It is most similar to the HA gene in the SW/Indiana/2000/H1N2 reference strain. This is a VERY common H1 subtype and the SIV vaccine that we give to sows and gilts contains a virus that has an HA gene that is similar to the IN00-H1 reference isolate.  We would expect it to provide some cross protection against this new virus if pigs were exposed.
  • The NA (N1) is like a virus from Korea that was found in pigs.  We don’t know much about this N1 subtype as it has never been seen in the US before.
  • The M gene is like a virus from Korea that was found in pigs.
  • The other 5 genes are part of what Dr. Vincent has described as the “triple re-assortment internal gene cassette” as it contains genes from pigs, people and bird isolates.  These internal genes are found in almost all swine influenza isolates in the US over the last couple of years.  
We have a high degree of confidence that we have not seen this virus in the NA swineherd before.  Based on the Korean lineage of the NA and M gene segments, it appears that an Asian source was involved. We will never know where the virus recombined and was able to infect people. 

Cross species transmission of influenza virus

Infection of People with Swine Like Influenza Virus

The CDC states on its website: “Swine Influenza (swine flu) is a respiratory disease of pigs caused by type A influenza that regularly cause outbreaks of influenza among pigs. Swine flu viruses do not normally infect humans, however, human infections with swine flu do occur, and cases of human-to-human spread of swine flu viruses have been documented. See General Information about Swine Flu. From December 2005 through February 2009, a total of 12 human infections with swine influenza were reported from 10 states in the United States. Since March 2009, a number of confirmed human cases of a new strain of swine influenza A (H1N1) virus infection in California, Texas, and Mexico have been identified. An investigation into these cases is ongoing. For more information see Human Swine Flu Investigation.” (http://www.cdc.gov/swineflu/)

According to Dr. Greg Gray (U of Iowa School of Public Health) who has done research on human infections with swine influenza virus: “If the reports in Mexico are validated then this novel SIV virus seems to have increased transmissibility in moving from human to human.  We just have no idea if it is transmissible from pig to pig or across species.  As far as I know the novel virus has not been detected among pigs.”

There has been a human like influenza virus (H1N1) that has infected swine in North America.  At least one commercial SIV vaccine (Flusure XP; Pfizer Animal Health, New York, NY) has included a similar virus. 

Infection of pigs with Novel H1N1 swine like virus from TX and CA

Dr. KJ Yoon at Iowa State University  said “There is no evidence yet that this virus cannot be handled by the current SIV vaccines.  I presume that NADC/NVSL folks will test the CA virus on HI and SVN tests soon, so we would know more about this.  Nonetheless, in a way I see, the virus contains HA gene similar to H1 SIV circulating in US swine.  It is reasonable to believe then that current swine population may not go through any severe disease unless Eurasian NA or M gene products have great impact on the pathogenesis or cross protection (I doubt it).  With the same reason, practitioners/producers would not experience terrible vaccine failure as HA is the most important part of vaccine-induced protection.  Taking precaution is a good measure since influenza is a zoonotic disease, but we should not be panic over this particular virus yet.”

Controlling influenza infection

There are two basic process to help control influenza infection:

  1. Hand Washing
  2. Covering your mouth when you cough


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